PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00001.70
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 276aa    MW: 31346.8 Da    PI: 5.0471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00001.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20120169255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp   g+r r +lg+++taeeAa  +++a+ kl+g
  Jcr4S00001.70 120 KYRGVRQRP-WGKWAAEIRDP---GRRVRLWLGTYDTAEEAAMVYDNAAIKLRG 169
                    8********.**********8...556*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-30119177IPR001471AP2/ERF domain
CDDcd000183.31E-33120176No hitNo description
PfamPF008476.2E-14120169IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-22120177IPR016177DNA-binding domain
SMARTSM003801.2E-38120183IPR001471AP2/ERF domain
PROSITE profilePS5103224.052120177IPR001471AP2/ERF domain
PRINTSPR003678.1E-11121132IPR001471AP2/ERF domain
PRINTSPR003678.1E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MMEQSILCPM KYTEHKQVTK KFTKPSLKPR KDDRNRLEHN PPRVVRISVT DPDATDSSSD  60
EEGELFGRQR VKRYVNEISI EEGCKEIIPI ANGRKRAGTE LPAAHRRLKL NTANSNNGRK  120
YRGVRQRPWG KWAAEIRDPG RRVRLWLGTY DTAEEAAMVY DNAAIKLRGP DALTNFMTPP  180
RREEAAEAET EQVEEKTETN ATSTSGYESG GPSLFDDDTI TKTTSNIVLQ ETISSHEDFS  240
DIFADMPQDF GSFNHQEDDF FQDIGDLFFS EPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-21118176362ATERF1
3gcc_A7e-21118176362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090126.11e-145PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLA0A067JQB61e-144A0A067JQB6_JATCU; Uncharacterized protein
STRINGPOPTR_0015s06070.11e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-56cytokinin response factor 4